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The resultant multiple alignment can be coloured according to different structural features and the matching 3D structures can be superimposed and viewed in Ras Mol.

IBIS also infers/predicts interacting partners and binding sites by homology, by inspecting the protein complexes formed by close homologs of a given query.Currently it is the only tool that offers this kind of integration at this speed.PDBe Motif can be used to examine the characteristics of the binding sites of single proteins or classes of proteins such as Kinases and the conserved structural features of their immediate environments either within the same specie or across different species.cast P server uses the weighted Delaunay triangulation and the alpha complex for shape measurements.It provides identification and measurements of surface accessible pockets as well as interior inaccessible cavities, for proteins and other molecules.

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